生物信息学网站汇总.pdf

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1、EMBL biocomputing tutorialsPlant genome dababase tutorial生物信息学机构NCBIInternational Nucleotide Sequence Database Collaboration.EBIUSDASanger Centre北京大学生物信息学中心数据库信息发布及其它GenBank Release NotesdbEST summary reportEMBL release notesman emblDDBJ release notesrelnote.htmlEukaryotic promoter database release

2、notesSwissProt release notesman swissprotPIR release notesman pirPRF release notesman prfPDBSTR release notesman pdbstrProsite release notesman prositePDB release notesman pdbKEGG release notesman pathway核苷酸数据库GenBankdbESTdbSTSdbGSSGenome(NCBI)dbSNPHTGSUniGeneEMBL 核苷酸数据库Genome(EBI)向 EMBL 数据库提交序列DDBJ

3、Plant R gene database启动子数据库Eukaryotic promoter database转录因子数据库FRANSFACooTFD蛋白质数据库SWISS-PROT 或 TrEMBLPIRPRFPDBSTRbfind pdbstr-todayProsite布局数据库PDBNDBDNA-Binding Protein DatabaseNMR Nucleic Acids DatabaseProtein Plus DatabaseSwiss 3DimageSCOPCATH酶、代谢和调控路径数据库KEGGEnzyme Nomenclature DatabaseProtein Kina

4、se Resource(PKR)LIGANDWITEcoCycUM-BBD多种代谢路径数据库基因调控路径数据库(TRANSPA TH)基因组数据库日本水稻基因组数据库(RGP)华大水稻基因组框架图欧洲水稻测序第 12 染色体拟南芥基因组数据库USDA DatabaseDemeters GenomesRiceGenesRiceBlastDBFlyBaseMouse Genome InformaticsSaccharomyces Genome Databaseurl=/url多种基因组数据库文献数据库PubMedOMIMAgricola关键词为根底的数据库检索EntrezEntrez Nucleo

5、tide Sequence SearchEntrez Protein Sequence SearchBatch EntrezSequence Retrieval System,IndiaSequence Retrieval System,SingaporeSequence Retrieval System,USSequence Retrieval System,UKGetEntry Nucleotide&Protein Sequence SearchDatabase Search with Key WordsDBGET/LinkDB序列为根底的数据库检索BLASTFASTABLITZSSear

6、chElectronic PCRProteome analysis多序列阐发Clustal multiple sequence alignment.htmlBCMEBI ClustalW analysis系谱阐发PAUPEBI ClustalW analysisGCG packagePHYLIPMEGA/METREEHennig86GAMBIT./Research/Programs/MacCladePhylogenetic analysis基因布局预测阐发GENSCANGeneFinderGene Feature SearchesGrailGrailEXPGeneMarkVeilAATGENE

7、IDGenlangGeneParserGlimmerMZEFProcrustes蛋白质布局预测阐发ExpasyPredicting protein secondary structurePredicting protein 3D StructuresPredicting protein structures其它阐发东西和软件Putative DNA Sequencing Errors CheckMatInspectorFastMWeb Signal ScanBCM Search LauncherWebcutterTranslate DNA to proteinABIMsequence moti

8、fs:PfamProDomPRINTS其它多种数据库、阐发东西和生物信息学机构多种数据库和阐发东西Comparative sequence analysis功能基因组阐发Transcription profiling technologiesProtocols for cDNA array technologyData management and analysis of gene expression arraysExamples of commercially available filter arrays:GeneFiltersTM(Research Genetics)Gene Discovery Arrays(Genome Systems)AtlasTM Arrays(CLONTECH)